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Acta agriculturae Slovenica, 104(December 2014)2, 69–74.

Agris category codes: Q01
COBISS                    1.01
Language
: Slovene

Effect of storage period and egg weight on hatchability in Prelux-G chickens

Dušan TERČIČ 1, Tea SMERDU

1 Univ. of Ljubljana, Biotechnical Fac., Dept. of Animal Science, Groblje 3, SI-1230 Domžale, Slovenia

ABSTRACT

The main purpose of the study was to determine the influence of storage period and egg weight on hatchability of Slovenian provenance Prelux-G eggs. The layer breeders were reared in partially slatted floor pens. At the beginning of the experiment they were 31 weeks old and at the end 35 weeks. Hatching eggs were collected daily and kept in one farm storage compartment at the temperature 15 °C. Eggs were classed by storage period (0, 1, 2, 4, 6, 8, 10, 12 and 14 days) and egg weight size categories (XL-extra large, L-large, M-medium and S-small). The highest hatchability (88.97 %) was obtained at six days storage time. In comparison with this result, the hatchability of fresh eggs (74.63 %), 12 days storage time (74.99 %) and 14 days storage time (62.87 %) was significantly (P < 0.01) lower. Hatchability was insignificantly (P > 0.05) lower in small sized eggs (78.97 %) and significantly (P < 0.01) lower in large sized eggs (76.72 %) than in medium sized eggs (82.44 %). The highest percentage of dead embryos was recorded at 14 days storage time (26.90 %) and in large sized eggs (19.72 %). The average body weight of the chicks produced from the eggs of older hens was significantly higher (P < 0.001) than those from younger hens.

Key words: chickens / provenance / Prelux-G / hatching eggs / hatchability / storage / Slovenia


Acta agriculturae Slovenica, 104(December 2014)2, 75–79.

Agris category codes: L01, Q04
COBISS                    1.01
Language
: English

Fat quality in the indigenous Krškopolje pig reared in an enriched environment

Marjeta ŽEMVA 1, Tania M. NGAPO, Špela MALOVRH, Alenka LEVART, Milena KOVAČ

1 Univ. of Ljubljana, Biotechnical Fac., Dept. of Animal Science, Groblje 3, SI-1230 Domžale, Slovenia

ABSTRACT

The search for fat composition and content that is favourable in intramuscular fat (IMF) for fresh meat quality and at the same time in subcutaneous adipose tissue (SCF) for processed meat products, within the same breed, is reflected in the growing interest in native pig breeds. The aim of this study was to determine the fatty acid composition of the IMF of M. longissimus dorsi (LD) and adjacent SCF from the Slovenian indigenous Krškopolje pig. The type of fat from the 42 Krškopolje pig significantly affected the proportions of 29 of the 35 fatty acids measured here. The SCF contained higher proportions of saturated fatty acids (SFA) and polyunsaturated fatty acids (PUFA) and correspondingly less monounsaturated fatty acids (MUFA) than the IMF. Taking the extremes, the IMF at 6–10 % of the LD had higher proportions of SFA and MUFA and less PUFA than the IMF at 2–3 %. The thicker SCF (57–67 mm) was higher in SFA and lower in PUFA than thinner (30–40 mm). Sex and age also affected fatty acid composition; the fat from barrows was higher in MUFA and lower in PUFA than that from gilts, and with increasing age, MUFA content increased.

Key words: pigs / autochthonous breeds / Krškopolje pig / enriched environment / fatty acid composition / intramuscular fat / back subcutaneous fat / quality


Acta agriculturae Slovenica, 104(December 2014)2, 81–90.

Agris category codes: Q02
COBISS
                   1.01
Language: English

Seashell specialties and food handling in Slovene Istria restaurants

1, Tadeja JAKUS, Mojca BIZJAK

1 Univ. of Primorska, Fak. of Health Sciences, Polje 42, SI-6310 Izola, Slovenia

ABSTRACT

The purpose of the research was to evaluate the offer of seashell specialties in Slovene Istria restaurants, and to assess food safety knowledge (gained through formal and informal education) as well as to assess the behaviour of food handlers in preparing shell dishes. A self-administered questionnaire was designed that included four sections: a demographic section, a general section, a restaurant menu offer, and a food safety section related to preparation of seashell specialties. Seashell specialties were offered in 41 restaurants, of which the employed food handlers 24 attended formal education and 17 informal education. Seashells specialties and seashell menus are commonly part of the culinary and gastronomic specialties along the Slovene coast, with the most frequently offered main dish being “Blue Mussels alla Busara”. Results the questionnaire indicated poor food safety knowledge and poor behaviour regardless of the (in)formal education of those who prepared the dishes. We propose that formal education for catering workers preparing shell dishes should be much more emphasized.

Key words: food / seashells / seashell specialties / seashells handling / HACCP / restaurants / education / questionnaires / Slovenia


Acta agriculturae Slovenica, 104(December 2014)2, 91–98.

Agris category codes: L50
COBISS 
                  1.01
Language: English

Student performance study: the outcomes of metabolic, molecular and physical-chemical characterization of intestinal tract microbiome on a four mammalian species model

Nataša CIBER, Mateja DOLENC, Benjamin DRAKSLAR, Andreja GAZVODA, Nika KLINEC, Bojan PAPIÆ, Anja PUGELJ, Katarina ŠIMUNOVIÆ, Tamara ZORAN, Tina ZUPANČIČ, 1

1 Univ. of Ljubljana, Biotechnical Fac., Dept. of Animal Science, Groblje 3, SI-1230 Domžale, Slovenia

ABSTRACT

Many environmental factors influence the structure of microbial communities, their activity and properties of the environment of the digestive tract. Contrary to constant disturbances, the system provides the basis for energy conversion and thus the long-term stable coexistence of different hosts and their specific intestinal microbiota over geological timescales. Since the methodological approaches proved to be the largest source of systematic errors in comparisons of microbial communities among different organisms of the same species or between different species, we tested a number of methods on samples from different species of mammals in order to verify the feasibility of this approach for future routine analysis of microbiomes:(i) analyses of physical-chemical parameters;(ii)the metabolic properties of attached, planktonic fractions in comparison to the total;(iii)structure of microbial communities of bacteria and archaea; (iv)data analysis. We used a model of intestinal samples from four species of mammals, encompassing the differences between the various types of intestinal tracts: ruminants and rodents (such as pre- and post- peptic fermentors), omnivores and carnivores. The second purpose of the study was to(i)assess the extent of spread of data due to the cooperation of the various operators on the data obtained, and(ii) to evaluate the skills of the students to carry out industry-oriented investigations and measurements in 1st year of MSc study Microbiology; and(iii) to promote awareness of the importance of routine laboratory work day and the corresponding duties. The results suggest(i)that the operators independently organized and shared tasks;(ii)successfully completed all methods;(iii)obtain relevant information;(iv)critically evaluated and interpreted within the extent of their knowledge;(v) that relative standard deviation(RSD) typically could be compared to those of the automated analytical procedures(<10 %) and therefore represented the maximum extent of the variability of the biological material itself. It follows that the motivated MSc students were able to uphold the unknown protocols under supervision and perform laboratory and analytical complex experimental task, process and interpret results, and approximate performance of analytical procedures in industrial laboratories to generate data sets of acceptable high-quality.

Key words: microbiology / mammals / intestinal tract / microbiota / metabolic profiling / student work / quality


Acta agriculturae Slovenica, 104(December 2014)2, 99–108.

Agris category codes: L50
COBISS 
                  1.01
Language: Slovene

Ruminococcus flavefaciens 007C cellulosomes and cellulase consortium [*]

1

1 Univ. of Ljubljana, Biotechnical Fac., Dept. of Animal Science, Groblje 3, SI-1230 Domžale, Slovenia

ABSTRACT

Ruminococcus flavefaciens is among the most important cellulolytic bacterial species in rumen and gastrointestinal tract of monogastric herbivorous animals. Its efficiency in degradation of (hemi)cellulosic substrates is associated with the production of remarkably intricate extracellular multienzyme complexes, named cellulosomes. In the present work we investigated the cellulolytic system of 007C. The bioinformatic analysis of the draft genome sequence revealed identical organization of sca gene cluster as has previously been found in four other strains of R. flavefaciens. The cluster consists of five genes in the following order: scaC-scaA-scaB-cttA-scaE. The cellulases of R. flavefaciens 007C belong to four families of glycoside hydrolases, namely GH48, GH44, GH9 in GH5. Majority of these enzymes are putative endoglucanases, belonging to families GH5 and GH9, whereas only one gene encoding GH44 and GH48 was found. Apart from catalytic domains, most of these proteins also contain dockerins – signature sequences, which indicate their attachement to cellulosomes. On the other hand, carbohydrate-binding modules were only found coupled to GH9 catalytic domains. Zymogram analysis showed that larger endoglucanases were mostly constitutively expressed, wheras smaller enzymes were only detected in later phases of Avicel-grown cultures.

Key words: microbiology / molecular genetics / Ruminococcus flavefaciens / cellulosomes / glycoside hydrolases / anaerobic cellulose degradation


[*] This article is a part of the doctoral dissertation »Cellulolytic system of bacterium Ruminococcus flavefaciens strains 007C and 007S«, issued by Maša Vodovnik, supervisor Prof. Romana Marinšek Logar, Ph.D.


Acta agriculturae Slovenica, 104(December 2014)2, 109–118.

Agris category codes: P10, T01
COBISS 
                  1.01
Language: Slovene

Insights into aerobic microbial community in the Kamniška Bistrica river sediment with culture-dependent and molecular biology approach

1

1 Univ. of Ljubljana, Biotechnical Fac., Dept. of Animal Science, Groblje 3, SI-1230 Domžale, Slovenia

ABSTRACT

River systems are exposed to anthropogenic disturbances, including chemical pollution and eutrophication. They may affect a structure and diversity of microbial communities in river sediment. The aim of the study was to describe diversity and structure of a bacterial community in the Kamniška Bistrica river sediment using culture-dependent and molecular methods. Sediment samples were collected from three sampling stations along the Kamniška Bistrica river: upstream (Kamniška Bistrica), midstream (Vir) and downstream (Bišče), and physico-chemical analysis was conducted on-site. Isolates were recovered from three different agar plate media (LB, NB in R2A) and micro- as well as macromorphologically described. DNA was extracted from pure cultures and directly from sediment samples, and 16S rRNA gene segments were PCR amplified using universal bacterial primers. The PCR products were subjected to denaturing gradient gel electrophoresis (DGGE). The results showed that the DGGE was an appropriate method for monitoring the changes in the community structure of the river sediment and allows to determine the impact of environmental factors on bacterial diversity. The comparative analysis of the DGGE profiles from isolates and sediment samples showed that the DGGE banding patterns revealed different bacterial community structures for all three sampling stations, while the DGGE profiles of isolates did not represent dominant bacterial populations of the sediment. On the bases of the DGGE profiles, 25 isolates were chosen and their 16S rRNA genes were amplified and sequenced. All partial nucleotide sequences of 16S rRNA genes were preleminary taxonomically identified by using BLAST. The majority of sequenced isolates belonged to bacteria normally present in aquatic environments.

Key words: microbiology / aerobic bacteria / river sediment / culture-dependent methods / molecular methods / environment protection / Slovenia


 

University of Ljubljana Biotechnical Faculty